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Publications 2008

• Abair TD, Sundaramoorthy M, Chen D, Heino J, Ivaska J, Hudson BG, Pozzi A & Zent R. (2008) The interplay between integrins α1β1 and α2β1 in renal cell tubulogenesis. Exp Cell Res 314:3593-604.
• Abrescia NGA, Grimes JM, Kivelä HM, Assenberg R, Sutton G, Butcher SJ, Bamford JK, Bamford DH & Stuart DI. (2008) Insights into virus evolution and membrane biogenesis from the structure of the marine lipid-containing bacteriophage PM2. Mol Cell.31:749-61.
• Acero JL, Rodríguez E, Majado ME, Sordo A & Meriluoto J. (2008) Oxidation of microcystin-LR with chlorine and permanganate during drinking water treatment. Journal of Water Supply: Research and Technology - AQUA. 57: 371-380.
• Ahola V, Aittokallio T, Vihinen M, Uusipaikka E (2008). Model-based prediction of sequence alignment quality. Bioinformatics. 24: 2165-2171.
• Amundsen LK, Kokkonen JT & Sirén H. (2008) Comparison of partial filling MEKC analyses of steroids with use of ESI-MS and UV spectrophotometry. Journal of Separation Science. 31:803-813.
• Amundsen LK. (2008) Use of non-specific and specific interactions in the analysis of testosterone and related compounds by capillary electromigration techniques. Department of Chemistry, University of Helsinki, Helsinki. (Dissertation)
• Arellano JB, Torkkeli M, Tuma R, Laurinmäki P, Melø TB, Ikonen TP, Butcher SJ, Serimaa Ritva E & Psenck J. (2008) Hexanol-Induced Order-Disorder Transitions in Lamellar Self-Assembling Aggregates of Bacteriochlorophyll c in Chlorobium Tepidum Chlorosomes. Langmuir. 24:2035-41.
• Belevich I & Verkhovsky MI. (2008) Molecular mechanism of proton translocation by cytochrome c oxidase. Antioxidants & Redox Signaling.10:1:1-30.
• Bergman L, Rosenholm J, Öst AB, Duchanoy A, Kankaanpää P, Heino J & Lindén M. (2008) On the importance of surface chemical engineering for controlling nanoparticle suspension stability in biotargeting and imaging applications. Journal of Nanomaterials. 2008: article id 712514
• Björkblom B, Vainio JC, Hongisto V, Herdegen T, Courtney MJ & Coffey ET. (2008) All JNKs can kill but nuclear localization is critical for neuronal death. J Biol Chem. 283:19704-19713.
• Björkblom B. (2008) Identification and functional characterization of brain substrates for the stress activated protein kinase JNK. Department of Biochemistry and Pharmacy, Åbo Akademi University, Turku. (Dissertation)
• Björkbom A, Yamamoto T, Kaji S, Harada S, Katsumura S & Slotte JP. (2008) Importance of the phosphocholine linkage on sphingomyelin molecular properties and interactions with cholesterol; a study with phosphate oxygen modified sphingomyelin-analogues. Biochim Biophys Acta 1778:1501-1506.
• Björkqvist JE, Nybond S, Nyholm T, Slotte JP & Ramstedt B. (2008) N-palmitoyl-sulfatide participates in lateral domain formation in complex lipid bilayers. Biochim Biophys Acta 1778:954-962.
• Borisov VB, Belevich I, Bloch DA., Mogi T, Verkhovsky MI. (2008) Glutamate 107 in subunit I of cytochrome bd from Escherichia coli is part of a transmembrane intraprotein pathway conducting protons from cytoplasm to the heme b595/heme d active site. Biochemistry. 47:7907-7914.
• Buggiotti L, Primmer CR, Kouvonen P, Bures S, Corthals GL, Leder EH (2008). Identification of differentially expressed proteins in Ficedula flycatchers. Proteomics. 8: 2150-2153.
• Cai C, Li H, Kangasniemi A, Pihlajamaa T, Ossowski LV, Kerkelä K, Schulz S, Rivera C, Keinänen K (2008). Somatostatin receptor subtype 1 is a PDZ ligand for synapse-associated protein 97 and a potential regulator of growth cone dynamics. Neuroscience. 157: 833-843.
• Chen J, Fallarero A, Määttänen A, Sandberg M, Peltonen J, Vuorela PM, Riekkola ML. (2008) Living cells of Staphylococcus aureus immobilized onto the capillary surface in electrochromatography: a tool for screening of biofilms. Anal Chem. 80(13):5103-9.
• Collado MC, Meriluoto J & Salminen S. (2008) Adhesion and aggregation properties of probiotic and pathogen strains. European Food Research and Technology. 226:1065-1073.
• Cotton RGH, Auerbach AD, Beckmann JS, Blumenfeld OO, Brookes AJ, Brown AF, Carrera P, Cox DW, Gottlieb B, Greenblatt MS, Hilbert P, Lehvaslaiho H, Liang P, Marsh S, Nebert DW, Povey S, Rossetti S, Scriver CR, Summar M, Tolan DR, Verma IC, Vihinen M, Dunnen JTd (2008). Recommendations for locus-specific databases and their curation. Hum Mutat. 29: 2-5.
• de la Cruz A, Rublee P, Hungerford JM, Zimba PV, Wilhelm S, Meriluoto JAO, Echols K, Meyer MT, Stelma G, Mandeville R, Lawton L, Sivonen K & Furey A. (2008) Analytical methods workgroup report - Advances in Experimental Medicine and Biology, vol. 619. Cyanobacterial Harmful Algal Blooms: State of the Science and Research Needs (H. K. Hudnell, Ed.), New York: Springer Science, pp. 469-481, ISBN 978-0-387-75864-0.
• Denessiouk KA, Denesyuk AI & Johnson MS. (2008) Negative modulation of signal transduction via interleukin splice variation. Proteins. 71:751-70.
• Dhavala P, Krasotkina J, Dubreuil C & Papageorgiou AC. (2008) Expression, purification and crystallisation of Helicobacter pylori L-asparaginase Acta Crystallogr F. 64:740-742.
• Elo LL, Filén S, Lahesmaa R, Aittokallio T (2008). Reproducibility-optimized test statistic for ranking genes in microarray studies. IEEE/ACM Trans Comput Biol Bioinform. 5: 423-431.
• Euro L, Belevich G, Verkhovsky M.I., Wikström M, Verkhovskaya M. (2008) Conserved lysine residues of the membrane subunit NuoM are involved in energy conversion by the proton-pumping NADH:ubiquinone oxidoreductase (Complex I). Biochim. Biophys. Acta.1777:1166-1172
• Euro L, Bloch DA, Wikström M, Verkhovsky MI & Verkhovskaya M. (2008) Electrostatic Interactions Between Fe-S Clusters in NADH:ubiquinone oxidoreductase (Complex I) from Escherichia coli. Biochemistry. 47:3185-3193.
• Fadeeva MS, Bertsova YV, Verkhovsky MI, Bogachev AV.(2008) Site-directed mutagenesis of conservative cysteine residues in NqrD and NqrE subunits of Na+-translocating NADH:quinone oxidoreductase Biochemistry (Moscow).73:123-129.
• Fan Y, Karhunen PJ, Levula M, Ilveskoski E, Mikkelsson J, Kajander OA, Järvinen O, Oksala N, Thusberg J, Vihinen M, Salenius J, Kytömäki L, Soini JT, Laaksonen R, Lehtimäki T (2008). Expression of sterol regulatory element-binding transcription factor (SREBF) 2 and SREBF cleavage-activating protein (SCAP) in human atheroma and the association of their allelic variants with sudden cardiac death. Thromb J. 6: 17.
• Filén J-J, Filén S, Moulder R, Tuomela S, Ahlfors H, West A, Kouvonen P, Kantola S, Björkman M, Katajamaa M, Rasool O, Nyman TA & Lahesmaa R. (2008) Quantitative proteomics reveals GIMAP family proteins 1 and 4 to be differentially regulated during human T helper cell differentiation. Molecular & Cellular Proteomics, published August 12.
• Filén J-J. (2008) Quantitative proteomics in the characterization of T helper lymphocyte differentiation. Department of Medicinal Biochemistry and Molecular Biology, University of Turku, Turku. (Dissertation)
• Gopalacharyulu PV, Lindfors E, Miettinen J, Bounsaythip CK & Oresic M. (2008) An integrative approach for biological data mining and visualisation. Int J Data Mining and Bioinformatics. 2:54-77.
• Gorbikova E, Belevich I, Wikström M & Verkhovsky MI. (2008) The proton donor for O-O bond scission by cytochrome c oxidase. Proc. Natl. Acad. Sci. USA.105:10733-10737.
• Gorbikova EA, Wikström M, Verkhovsky MI (2008). The protonation state of the cross-linked tyrosine during the catalytic cycle of cytochrome c oxidase. J Biol Chem. 283: 34907-34912.
• Hakulinen MA, Pajander J, Leskinen J, Ketolainen J, van Veen B, Niinimäki K, Pirskanen K, Poso A & Lappalainen R. (2008) Ultrasound transmission technique as a potential tool for physical evaluation of monolithic matrix tablets. AAPS PharmSciTech. 9:267-273.
• Hakulinen N, Andberg M, Kallio J, Koivula A, Kruus K & Rouvinen J. (2008) A near-atomic resolution structure of a Melanocapus albomyces laccase. J Struct Biol. 162:39-39.
• Halling K (2008). Effects of sterol, phospholipid and intercalator structure on the properties of lipid model membranes. Department of Biochemistry and Pharmacy, Åbo Akademi University (Dissertation)
• Halling KK, Ramstedt B & Slotte JP. (2008) Glycosylation induces shifts in the lateral distribution of cholesterol from ordered towards less ordered domains. Biochim Biophys Acta. 1778:1100-1111.
• Halling KK, Ramstedt B, Nyström JH, Slotte JP, Nyholm TK. (2008) Cholesterol interactions with fluid-phase phospholipids: effect on the lateral organization of the bilayer. Biophys J. 95:3861-71
• Halttunen T, Collado MC, El-Nezami H, Meriluoto J & Salminen S. (2008) Combining strains of lactic acid bacteria may reduce their toxin and heavy metal removal efficiency from aqueous solution. Letters in Applied Microbiology. 46:160-5
• Halttunen T, Salminen S, Meriluoto J, Tahvonen R & Lertola K. (2008) Reversible surface binding of cadmium and lead by lactic acid and bifidobacteria. International Journal of Food Microbiology 125:170-175.
• Havukainen H, Haataja S, Kauko A, Pulliainen AT, Salminen A, Haikarainen T, Finne J & Papageorgiou AC. (2008) Structural basis of zinc- and terbium-mediated inhibition of ferroxidase activity in Dps ferritin-like proteins. Protein Sci.17:1513-21.
• Hayouka R, Eisenberg-Domovich Y, Hytönen VP, Määttä JAE, Nordlund HR, Kulomaa MS, Wilchek M, Bayer EA & Livnah O. (2008) Critical importance of loop conformation to avidin-enhanced hydrolysis of an active biotin ester. Acta Cryst D. 64:302-308.
• Hellwig CT, Kohler BF, Lehtivarjo A-K, Dussmann H, Courtney MJ, Prehn JH & Rehm M. (2008) Real-time analysis of TRAIL/CHX-induced caspase activities during apoptosis initiation. J Biol Chem. 283:21676-85.
• Helppolainen SH, Määttä JAE, Halling KK, Slotte JP, Hytönen VP, Jänis J, Vainiotalo P, Kulomaa MS, Nordlund HR (2008). Bradavidin II from Bradyrhizobium japonicum: a new avidin-like biotin-binding protein. Biochim Biophys Acta. 1784: 1002-1010.
• Herman MD, Nyman T, Welin M, Lehtiö L, Flodin S, Trésaugues L, Kotenyova T, Flores A, Nordlund P (2008). Completing the family portrait of the anti-apoptotic Bcl-2 proteins: crystal structure of human Bfl-1 in complex with Bim. FEBS Lett. 582: 3590-3594.
• Holmström TH, Mialon A, Kallio M, Nymalm Y, Mannermaa L, Holm T, Johansson H, Black E, Gillespie D, Salminen TA, Langel U, Valdez B, Westermarck J. (2008) C-jun supports ribosomal RNA processing and nucleolar localization of RNA helicase DDX21. Journal of Biological Chemistry. 283:7046-7053.
• Holt A, Almeida RFMd, Nyholm TKM, Loura LMS, Daily AE, Staffhorst RWHM, Rijkers DTS, Koeppe RE, Prieto M, Killian JA (2008). Is there a preferential interaction between cholesterol and tryptophan residues in membrane proteins? Biochemistry. 47: 2638-2649.
• Hongisto V, Vainio JC, Thompson R, Courtney MJ & Coffey ET. (2008) The Wnt pool of GSK-3β is critical for trophic deprivation induced neuronal death. Mol Cell Biol. 28:1515-1527.
• Huhtiniemi T, Suuronen T, Rinne VM, Wittekindt C, Lahtela-Kakkonen M, Jarho E, Wallén EAA, Salminen A, Poso A, Leppänen J (2008). Oxadiazole-carbonylaminothioureas as SIRT1 and SIRT2 inhibitors. J Med Chem. 51: 4377-4380.
• Hyder C, Pallari H-M, Kochin V, Eriksson JE. (2008) Providing cellular signposts-post-translational modifications of intermediate filaments. FEBS Lett. 582:2140-8.
• Hänninen P, Soini JT & Soukka J. (2008) Two-photon excitation fluorescence bioassays. Annals of the New York Academy of Sciences. 1130:320-326.
• Härmä H, Graf C, Hänninen P. (2008) Synthesis and characterization of core-shell europium(III)-silica nanoparticles. Journal of Nanoparticle Research 3/2008 online.
• Innocenti A, Hilvo M, Scozzafava A, Lindfors M, Nordlund HR, Kulomaa MS, Parkkila S & Supuran CT. (2008) Carbonic anhydrase inhibitors. The very weak inhibitors dithiothreitol, β-mercaptoethanol, tris(carboxyethyl)-phosphine and threitol interfere with the binding of sulfonamides to isozymes II and IX. Bioorg Med Chem Lett. 18:1898-1903.
• Jaakkola S, El-Showk S & Annila A. (2008) The driving force behind genomic diversity. Biophys Chem. 134:232-8.
• Jaakkola S, Sharma V & Annila A. (2008) Cause of chirality consensus. Curr Chem Biol. 2:153-8.
• Jaatinen ST, Happonen LJ, Laurinmäki P, Butcher SJ & Bamford DH. (2008) Biochemical and structural characterisation of membrane-containing icosahedral dsDNA bacteriophages infecting thermophilic Thermus thermophilus. Virology. 379:10-9.
• Jalasvuori M, Bamford JKH (2008). Structural co-evolution of viruses and cells in the primordial world. Orig Life Evol Biosph. 38: 165-181.
• Johnson MS, Lu N, Denessiouk K, Heino J & Gullberg D. (2008) Integrins during evolution: evolutionary trees and model organisms. Requested review for Biochem Biophys Acta.
• Jurvansuu JM, Goldman A (2008). Recent inventions on receptor tyrosine kinase RET modulation. Recent Pat Biotechnol. 2: 47-54.
• Jyrkkärinne J, Windshügel B, Rönkkö T, Tervo AJ, Küblbeck J, Lahtela-Kakkonen M, Sippl W, Poso A, Honkakoski P (2008). Insights into ligand-elicited activation of human constitutive androstane receptor based on novel agonists and three-dimensional quantitative structure-activity relationship. J Med Chem. 51: 7181-7192.
• Jänis J, Pasanen S, Rouvinen J & Vainiotalo P. (2008) Characterization of a pH dependent dissociation of Streptomyces rubiginosusxylose isomerase by ESI FT-ICR mass spectrometry. J. Mass Spectrom. 43:1376-80.
• Jänis J, Rouvinen J, Vainiotalo P, Turunen O & Shnyrov VL:. (2008) Irreversible thermal denaturation of Trichoderma reesei endo-1,4-b-xylanase II and its three disulfide mutants characterized by differential scanning calorimetry and ESIFT-ICR mass spectrometry. Int J Biol Macromol. 42:75-80.
• Jäälinoja HT, Roine E, Laurinmäki P, Kivelä HM, Bamford DH & Butcher SJ. (2008) Structure and host cell interaction of SH1, a lipid-containing, halophilic euryarchaeal virus. Proc Natl Acad Sci. (USA) 105:8008-8013.
• Kaila V, Verkhovsky MI, Hummer G & Wikström M. (2008) Prevention of leak in the proton pump of cytochrome c oxidase. Biochim. Biophys. Acta. 1777:890-892.
• Kaila VRI., Verkhovsky MI, Hummer G & Wikström M. (2008) Glutamic acid 242 is a control valve in the proton pump of cytochrome c oxidase. Proc. Natl. Acad. Sci. USA. 105:6255-6259.
• Kainov DE, Mancini E J, Telenius J, Lisal J, Grimes JM, Bamford, DH, Stuart DI & Tuma R. (2008) Structural Basis of Mechano-Chemical Coupling in a Hexameric Molecular Motor. J Biol Chem. 283:3607-17.
• Kainov DE, Vitorino M, Cavarelli J, Poterszman A, Egly J (2008). Structural basis for group A trichothiodystrophy. Nat Struct Mol Biol. 15: 980-984.
• Kallio P (2008). Type II Aromatic Polyketide Biosynthetic Tailoring Enzymes: Diversity and Adaptation in Streptomyces Secondary Metabolism. Department of Biochemistry and Food Chemistry, University of Turku (Dissertation)
• Kallio P, Liu Z, Mäntsälä P, Niemi J, Metsä-Ketelä M. (2008) A Nested Gene in Streptomyces Bacteria Encodes a Protein Involved in Quaternary Complex Formation. J Mol Biol. 375:1212-1221.
• Kalliokoski T, Ronkko T, Poso A (2008). FieldChopper, a new tool for automatic model generation and virtual screening based on molecular fields. J Chem Inf Model. 48: 1131-1137.
• Karjalainen M, Kakkonen E, Upla P, Paloranta H, Kankaanpää P, Liberali P, Hyypiä T, Heino J & Marjomäki V. (2008) A raft-derived, Pak1-regulated entry participates in α2β1 integrin-dependent sorting to caveosomes. Mol Biol Cell 19:2857-2869.
• Kinnunen T, Nyrönen T & Lehtovuori P (2008) SOMA2 - Open Source Framework for Molecular Modelling Workflows. Chemistry Central Journal. 2(Suppl1):P4
• Kisko K, Szilvay GR, Vainio U, Linder MB, Serimaa R (2008). Interactions of hydrophobin proteins in solution studied by small-angle X-ray scattering. Biophys J. 94: 198-206.
• Kivelä HM, Abrescia NGA, Bamford JKH, Grimes JM, Stuart DI, Bamford DH (2008). Selenomethionine labeling of large biological macromolecular complexes: probing the structure of marine bacterial virus PM2. J Struct Biol. 161: 204-210.
• Kivelä HM, Madonna S, Krupovìc M, Tutino ML, Bamford JKH (2008). Genetics for Pseudoalteromonas provides tools to manipulate marine bacterial virus PM2. J Bacteriol. 190: 1298-1307.
• Kivioja T, Tiirikka T, Siermala M, Vihinen M (2008). Dynamic covariation between gene expression and genome characteristics. Gene. 410: 53-66.
• Kiviranta PH, Salo HS, Leppänen J, Rinne VM, Kyrylenko S, Kuusisto E, Suuronen T, Salminen A, Poso A, Lahtela-Kakkonen M, Wallén EAA (2008). Characterization of the binding properties of SIRT2 inhibitors with a N-(3-phenylpropenoyl)-glycine tryptamide backbone. Bioorg Med Chem. 16: 8054-8062.
• Korolainen MA, Corthals GL, Kouvonen P, Kurkinen KMA, Nyman TA (2008). 3rd Annual FinnProt Meeting: from cells to systems. Expert Rev Proteomics. 5: 389-391.
• Kotel'nikova NE, Lysenko EL, Serimaa R, Pirkkalainen K, Vainio U, Lavrent'ev VK, Medvedeva DA, Shakhmin AL, Saprykina NN & Novoselov NP. (2008) Cellulose as a nanoreactor for the synthesis of nickel nanoparticles. Polymer Science Series A. 50:51-57.
• Koutsioulis D, Wang E, Tzanodaskalaki M, Nikiforaki D, Georges Feller G, Heikinheimo P & Bouriotis V. (2008) Insights into the Mechanism of Cold Adaptation of tab5 Alkaline Phosphatase. PEDS. 21:319-327.
• Käpylä J, Airenne TT, Johnson MS & Heino J. (2008) Conformational modifications and receptor clustering in the regulation of integrin function. Invited book chapter. Book edited by Ian Bank. (in press)
• Küblbeck J, Jyrkkärinne J, Poso A, Turpeinen M, Sippl W, Honkakoski P, Windshügel B (2008). Discovery of substituted sulfonamides and thiazolidin-4-one derivatives as agonists of human constitutive androstane receptor. Biochem Pharmacol. 76: 1288-1297.
• Laakkonen J (2008). Intracellular Delivery of Baculovirus and Strepavidin-based Vectors in vitro - Towards Novel Therapeutic Applications. Department of Biological and Environmental Science, University of Jyväskylä (Dissertation)
• Laakkonen JP, Kaikkonen MU, Ronkainen PHA, Ihalainen TO, Niskanen EA, Häkkinen M, Salminen M, Kulomaa MS, Ylä-Herttuala S, Airenne KJ, Vihinen-Ranta M (2008). Baculovirus-mediated immediate-early gene expression and nuclear reorganization in human cells. Cell Microbiol. 10: 667-681.
• Lad Y, Jiang P, Ruskamo S, Harburger DS, Ylänne J, Campbell ID, Calderwood DA (2008). Structural basis of the migfilin-filamin interaction and competition with integrin beta tails. J Biol Chem. 283: 35154-35163.
• Lahtinen T, Linder MB, Nakari-Setälä T, Oker-Blom C (2008). Hydrophobin (HFBI): A potential fusion partner for one-step purification of recombinant proteins from insect cells. Protein Expr Purif. 59: 18-24.
• Lankoff A, Sochacki J, Spoof L, Meriluoto M, Wojcik A, Wegierek A & Verschaeve L. (2008) Nucleotide excision repair impairment by nodularin in CHO cell lines due to ERCC1/XPF inactivation. Toxicology Letters. 179:101-107.
• Lappalainen I, Thusberg J, Shen B, Vihinen M (2008). Genome wide analysis of pathogenic SH2 domain mutations. Proteins. 72: 779-792.
• Lash LL, Sanders JM, Akiyama N, Shoji M, Postila P, Pentikäinen OT, Sasaki M, Sakai R & Swanson GT. (2008) Novel analogs and stereoisomers of the marine toxin neodysiherbaine with specificity for kainate receptors. Journal of Pharmacology and Experimental Therapeutics. 324:484-496.
• Lehtiö L, Collins R, Berg Svd, Johansson A, Dahlgren L, Hammarström M, Helleday T, Holmberg-Schiavone L, Karlberg T, Weigelt J (2008). Zinc binding catalytic domain of human tankyrase 1. J Mol Biol. 379: 136-145.
• Leo JC, Elovaara H, Brodsky B, Skurnik M & Goldman A. (2008) The Yersinia adhesin YadA binds to a collagenous triple-helical conformation but without sequence specificity. PEDS 21:475-484.
• Lindén MV, Meinander K, Helle A, Yohannes G, Riekkola M, Butcher SJ, Viitala T & Wiedmer SK. (2008) Characterization of phosphatidylcholine/ poly(ethylene glycol)-lipid aggregates and their use as coatings and carriers in capillary electrophoresis. Electrophoresis. 29:852-62.
• Malinen AM, Baykov AA & Lahti R. (2008) Mutual effects of cationic ligands and substrate on activity of the Na+-transporting pyrophosphatase of Methanosarcina mazei. Biochemistry 47:13447-54.
• Marjomäki V, Huhtala M, Karjalainen M, Hyypiä T & Heino J.(2008) Functions of integrin α2β1, a collagen receptor, in the internalization of echovirus 1. In: Structure based studies of viral replication. Eds. R.H. Cheng, T. Miyamura. World Scientific, Singapore. pp. 63-75.
• Mathivanan S, Ahmed M, Ahn NG, Alexandre H, Amanchy R, Andrews PC, Bader JS, Balgley BM, Bantscheff M, Bennett KL, Björling E, Blagoev B, Bose R, Brahmachari SK, Burlingame AS, Bustelo XR, Cagney G, Cantin GT, Cardasis HL, Celis JE, Chaerkady R, Chu F, Cole PA, Costello CE, Cotter RJ, Crockett D, DeLany JP, Marzo AMD, DeSouza LV, Deutsch EW, Dransfield E, Drewes G, Droit A, Dunn MJ, Elenitoba-Johnson K, Ewing RM, Eyk JV, Faca V, Falkner J, Fang X, Fenselau C, Figeys D, Gagné P, Gelfi C, Gevaert K, Gimble JM, Gnad F, Goel R, Gromov P, Hanash SM, Hancock WS, Harsha HC, Hart G, Hays F, He F, Hebbar P, Helsens K, Hermeking H, Hide W, Hjernø K, Hochstrasser DF, Hofmann O, Horn DM, Hruban RH, Ibarrola N, James P, Jensen ON, Jensen PH, Jung P, Kandasamy K, Kheterpal I, Kikuno RF, Korf U, Körner R, Kuster B, Kwon M, Lee H, Lee Y, Lefevre M, Lehvaslaiho M, Lescuyer P, Levander F, Lim MS, Löbke C, Loo JA, Mann M, Martens L, Martinez-Heredia J, McComb M, McRedmond J, Mehrle A, Menon R, Miller CA, Mischak H, Mohan SS, Mohmood R, Molina H, Moran MF, Morgan JD, Moritz R, Morzel M, Muddiman DC, Nalli A, Navarro JD, Neubert TA, Ohara O, Oliva R, Omenn GS, Oyama M, Paik Y, Pennington K, Pepperkok R, Periaswamy B, Petricoin EF, Poirier GG, Prasad TSK, Purvine SO, Rahiman BA, Ramachandran P, Ramachandra YL, Rice RH, Rick J, Ronnholm RH, Salonen J, Sanchez J, Sayd T, Seshi B, Shankari K, Sheng SJ, Shetty V, Shivakumar K, Simpson RJ, Sirdeshmukh R, Siu KWM, Smith JC, Smith RD, States DJ, Sugano S, Sullivan M, Superti-Furga G, Takatalo M, Thongboonkerd V, Trinidad JC, Uhlen M, Vandekerckhove J, Vasilescu J, Veenstra TD, Vidal-Taboada J, Vihinen M, Wait R, Wang X, Wiemann S, Wu B, Xu T, Yates JR, Zhong J, Zhou M, Zhu Y, Zurbig P, Pandey A (2008). Human Proteinpedia enables sharing of human protein data. Nat Biotechnol. 26: 164-167.
• Mattinen L, Somervuo P, Nykyri J, Nissinen R, Kouvonen P, Corthals G, Auvinen P, Aittamaa M, Valkonen JPT, Pirhonen M (2008). Microarray profiling of host-extract-induced genes and characterization of the type VI secretion cluster in the potato pathogen Pectobacterium atrosepticum. Microbiology. 154: 2387-2396.
• Mazur-Marzec H, Spoof L, Kobos J, Plinski M, Meriluoto J (2008). Cyanobacterial hepatotoxins, microcystins and nodularins, in fresh and brackish waters of the Pomeranian Province, northern Poland Oceanological and Hydrobiological Studies. 37: 3-21.
• Meriluoto JAO & Spoof LEM. (2008) Cyanotoxins: sampling, sample processing and toxin uptake - Advances in Experimental Medicine and Biology, vol. 619. Cyanobacterial Harmful Algal Blooms: State of the Science and Research Needs (H. K. Hudnell, Ed.), New York: Springer Science, pp. 483-499, ISBN 978-0-387-75864-0.
• Mikhailov A, Sokolovskaya A, Yegutkin GG, Amdahl H, West A, Yagita H, Lahesmaa R, Thompson LF, Jalkanen S, Blokhin D, Eriksson JE (2008). CD73 participates in cellular multiresistance program and protects against TRAIL-induced apoptosis. J Immunol. 181: 464-475.
• Minkkilä A, Saario SM, Käsnänen H, Leppänen J, Poso A, Nevalainen T (2008). Discovery of boronic acids as novel and potent inhibitors of fatty acid amide hydrolase. J Med Chem. 51: 7057-7060.
• Muntyan MS, Bloch DA (2008). Study of redox potential in cytochrome c covalently bound to terminal oxidase of alkaliphilic Bacillus pseudofirmus FTU. Biochemistry (Mosc). 73: 107-111.
• Muona M, Aranko AS, Iwai H (2008). Segmental isotopic labelling of a multidomain protein by protein ligation by protein trans-splicing. Chembiochem. 9: 2958-2961.
• Mäkelä AR, Enbäck J, Laakkonen JP, Vihinen-Ranta M, Laakkonen P, Oker-Blom C (2008). Tumor targeting of baculovirus displaying a lymphatic homing peptide. J Gene Med. 10: 1019-1031.
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* = equal contribution