The Malign plugin contains the MALIGN program by M.S. Johnson. It allows multiple alignment of sequences. The options can be interactively changed at the start of the computation. This plugin cannot be called from the main Bodil window as it requires special input. Options are set interactively.
There are no configurable options at this moment.
The output files are stored in user's personal temporary directory (see Config).
Call Execute( &BODIL::Alignment, * ).
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