Parse PIR
Introduction
Parse PIR formatted data (protein sequences, aligned).
- Read stream
- Read PIR-file
- Write stream
- Write PIR-file
- Write alignment to PIR-file
If more than one sequence are found from the file and all sequences
have equal number of characters, then an alignment object is created too.
File format
The ASCII formatted file is expected to contain one or more
sequence entries. Each sequence entry must have:
- Line
beginning with >P1; and followed by name for the sequence
- Line beginning with either structure or sequence
- The third line and subsequent lines are assumed to contain the
sequence, in capital letters, possibly containing whitespace. The
asterisk (*) indicates the end of sequence and thus the end of
the entry.
Configuration file entries
There are no configurable options at this moment.
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